24-26 September 2024
Bogolyubov Institute for Theoretical Physics (Section 1-4), Institute of Mathematics (Section 5)
Europe/Kiev timezone

Stimulating exitable membrane of ORN with stochastic Markov process

26 Sep 2024, 11:20
20m
322 (Bogolyubov Institute for Theoretical Physics (Section 1-4), Institute of Mathematics (Section 5))

322

Bogolyubov Institute for Theoretical Physics (Section 1-4), Institute of Mathematics (Section 5)

14-b, Metrolohichna Str., Kyiv, 03143, Ukraine 3, Tereschenkivska Str., Kyiv, 01024, Ukraine
Oral STATISTICAL PHYSICS AND KINETIC THEORY Morning Session 3

Speaker

Oleksandr Vidybida (Bogolyubov Institute for Theoretical Physics)

Description

Excitable membrane of olfactory receptor neuron (ORN) is populated with up to several millions of identical receptor proteins (R) able to bind / release odor (O) molecules. The affinity of R to O depends on the odor presented, and this is the initial mechanism which is recuired for the olfactory selectivity to exist.


Figure 1: Simplified R structure. Modified from [3].

The affinity of R to O depends on the odor presented, and this is the very first step the olfactory selectivity builds up. Recently, [1], it was shown for a so called membrane-less ORN model that its selectivity can be much better than that of its R. A more realistic ORN model should include an excitable membrane with its electric transients. This introduces time parameter into the ORN's response to stimulation. The latter renders inappropriate used in [1] reasoning in terms of binomial distribution, and necessitates consideration of temporal properties of O binding-releasing and the membrane charging-discharging-firing.

In this contribution, we develop an approach in which the number of R bound with O $n(t)$, is modeled as a Markov stochastic process. With each bound R,
as it is observed for insects [2], Fig. 1, we associate an open channel having conductance 0.015 nS, which injects a depolarizing current through the membrane.
The futher membrane evolution is governed by the leaky integrate-and-fire neuronal model, see Eq. (1).
$c_M\frac{dV(t)}{dt}=-g_l(V(t)-V_{rest}) - n(t)g_{R}(V(t)-V_{e})$,
where $V(t)$ --- is the membrane voltage; $V_{rest}$ --- is the resting voltage;
$c_M$ --- is the total capacity of ORN's membrane;
$g_l$ --- is the total leakage through it;
$V_{e}$ --- is the reversal potential for current through open $R$;
$n(t)$ --- is the fluctuating number of open channels at moment $t$ due
to odor molecules bound with $R$s;
$g_{R}$ --- is the conductance of a single open channel.

A fast, very efficient method is developed for generating stochastic trajectories $n(t)$ and solving Eq. (1) numerically, see Fig. 2. The first, introductory simulations based on this method, [4], support the conclusion made in [1] and before, that ORN's selectivity can be much better than that of its receptors R, provided that odors are presented in low concentrations.


Figure 2: An example of realization of stochastic process n(t) and corresponding membrane voltage, with three spikes emitted. Here, the total number of R per the ORN is $N = 2.5 · 10^6$

[1] A. K. Vidybida, ``Maximization of the olfactory receptor neuron selectivity in
the sub-threshold regime'', Ukrainian Journal of Physics, vol. 68, no.4, p. 266, 2023. Available: {\tt https://doi.org/10.15407/ujpe68.4.266}

[2] K. Sato, M. Pellegrino, T. Nakagawa, T. Nakagawa, L. B. Vosshall, and
K. Touhara, ``Insect olfactory receptors are heteromeric ligand-gated ion
channels'', Nature, vol. 452, no. 7190, pp. 1002--1006, 2008. Available: {\tt https://doi.org/10.1038/nature06850}

[3] D. Wicher, F. Miazzi, ``Functional properties of insect olfactory receptors: ionotropic receptors and odorant receptors'', Cell and Tissue Research, vol. 383(1):7-19 (2021). Available: {\tt https://doi.org/10.1007/s00441-020-03363-x}

[4] A. Vidybida, "Selectivity Gain in Olfactory Receptor Neuron at Optimal Odor Concentration," 2024 IEEE International Symposium on Olfaction and Electronic Nose (ISOEN), Grapevine, TX, USA, 2024, pp. 1-3. Available: {\tt https://ieeexplore.ieee.org/document/10556323}

Primary author

Oleksandr Vidybida (Bogolyubov Institute for Theoretical Physics)

Presentation Materials